Hi Rolf, That's pretty strange. Any chance you can share the file? It looks like PyMOL's somehow missing the last number in the result. I've easily loaded millions of atoms before and got the correct atom count.
Cheers, -- Jason On Wed, Apr 18, 2012 at 8:54 PM, Rolf S. Arvidson <rsa4...@gmail.com> wrote: > I am using pymol to display the surface of inorganic crystals, and > have used it successfully in the past for relatively small molecules. > I am not trying to display larger surfaces (>1e6 atoms), and now > notice a discrepancy between the number of atoms present in and loaded > from the source file, and that reported by pymol. I have included an > example using a file with 1398146 atoms. VMD loads and displays the > same file and reports the correct number of atom entries. However, > pymol oddly reports 139814 atoms, not 1398146. However, as far as I > can tell, the atoms do *appear* in the graphical display. I've posted > some screen captures at > > http://i1111.photobucket.com/albums/h464/lokidawg/pymol/cap1.png > http://i1111.photobucket.com/albums/h464/lokidawg/pymol/cap2.png > > to illustrate this. Can anyone guess at the cause of this? I am using > version 1.5.0.2, compiled from source (Funtoo Linux x86_64, 3.3.1 > kernel, 12012MB RAM). > Many thanks //Rolf > > ------------------------------------------------------------------------------ > For Developers, A Lot Can Happen In A Second. > Boundary is the first to Know...and Tell You. > Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! > http://p.sf.net/sfu/Boundary-d2dvs2 > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
