I recently compiled and installed PyMol on Arch Linux (see https://aur.archlinux.org/packages.php?ID=47323). When I look at something I pulled from the pdb, it appears somewhat transparent. For example, in the screenshot linked below, the heme and the molecule behind it are somewhat transparent. When I rotate it is impossible to tell which one is on top of the other. I do not have any 3D capabilities on this system. Glad to provide any additional details. Some output is attached here.
Thanks! Link to screenshot: http://s12.postimage.org/kf9ukr0y3/screenshot.png $ pymol PyMOL(TM) Molecular Graphics System, Version 1.5.0.1. Copyright (c) Schrodinger, LLC. All Rights Reserved. Created by Warren L. DeLano, Ph.D. PyMOL is user-supported open-source software. Although some versions are freely available, PyMOL is not in the public domain. If PyMOL is helpful in your work or study, then please volunteer support for our ongoing efforts to create open and affordable scientific software by purchasing a PyMOL Maintenance and/or Support subscription. More information can be found at "http://www.pymol.org";. Enter "help" for a list of commands. Enter "help <command-name>" for information on a specific command. Hit ESC anytime to toggle between text and graphics. Detected OpenGL version 2.0 or greater. Shaders available. Detected GLSL version 4.20. OpenGL graphics engine: GL_VENDOR: NVIDIA Corporation GL_RENDERER: GeForce GTS 450/PCIe/SSE2 GL_VERSION: 4.2.0 NVIDIA 295.40 Detected 4 CPU cores. Enabled multithreaded rendering. ------------------------------------------------------------------------------ Better than sec? Nothing is better than sec when it comes to monitoring Big Data applications. Try Boundary one-second resolution app monitoring today. Free. http://p.sf.net/sfu/Boundary-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
