Hello especially for those who are experienced using Contact Map Visualizer
Plugin. About generating a contact map, after typing the following command as
shown:
g_mdmat -f 2p31.pdb -s 2p31.pdb -mean contact-map.xpm
It gives us a list of group selection to analyze such as below: Select group
for analysis
Group 0 ( System) has 2616 elements
Group 1 ( Protein) has 2470 elements
Group 2 ( Protein-H) has 2470 elements
Group 3 ( C-alpha) has 314 elements
Group 4 ( Backbone) has 934 elements
Group 5 ( MainChain) has 1246 elements
Group 6 ( MainChain+Cb) has 1540 elements
Group 7 ( MainChain+H) has 1246 elements
Group 8 ( SideChain) has 1224 elements
Group 9 ( SideChain-H) has 1224 elements
Group 10 ( Prot-Masses) has 2470 elements
Group 11 ( non-Protein) has 146 elements
Group 12 ( Ion) has 2 elements
Group 13 ( CL) has 2 elements
Group 14 ( Water) has 144 elements
Group 15 ( SOL) has 144 elements
Group 16 ( non-Water) has 2472 elements
Group 17 ( Water_and_ions) has 146 elements My question is that is it
possible to modify that group selection? I want to add in group analysis on
alpha helix & beta sheet.For example Group 18 (Alpha helix) has 999 elements.
If it is possible? How & where can I do that? Hope you reply a.s.a.p
Many thanks,
Suhaila
------------------------------------------------------------------------------
This SF email is sponsosred by:
Try Windows Azure free for 90 days Click Here
http://p.sf.net/sfu/sfd2d-msazure
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
