Sajeewa,

> 1) Is there a way of changing the object names in a session file so that
> pymol will not get confused when I merge two sessions having  objects with
> the same name?

You need to ensure that each session has file names that will not
collide with name in other sessions. Rename each object to something
unique and re-save the session files. Use the "set_name" command or A
> Rename Object for each object.

> 2) If I am merging three session files, will it look like
>
>     load sessionA.pse
>
>     load sessionB.pse,partial=1
>
>     load sessionC.pse,partial=2

Partial is a binary flag:

load sessionA.pse
load sessionB.pse, partial=1
load sessionC.pse, partial=1
...

Cheeres,

-- Jason

-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC

(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120

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