Hi Osvaldo, Try
set defer_builds_mode, 5 then load your trajectories. Cheers, -- Jason On Wed, Feb 1, 2012 at 9:25 AM, Osvaldo Martin <aloctavo...@gmail.com> wrote: > Hi all, > > I want to load several pdb files (between ~200) as frames (11 Megabytes), I > want to be able to color by b-factor (each pdb file has diferent b-factor > values) I use this code I take from http://www.pymolwiki.org/index.php/Load > > from glob import glob > lst = glob("trj*.pdb") > lst.sort() > for fil in lst: > cmd.load(fil,"mov", discrete=1) > > > > The problem is that when PyMOL is loading the first ~70 pdb/frames the > loading process start to slow down quickly and then > > > takes for ever to end loading the rest of the files (in fact I manually > abort the session, because PyMOL virtually hangs). > > I am doing something wrong or is just that PyMOL is not really designed to > load long trajectories (as for example VMD). > > > There is someway to load all this files in an efficient way? > A workaround is to load only the backbone of the protein (2,7 Megabytes). It > takes one or two minutes to load everything. > But I would prefer to have also the sidechains. I also try doing > "cmd.hide()" just after loading each frame > > > (I guess may be was some "overload" to display the molecules, but it did not > help). > > Thanks. > > > > > > ------------------------------------------------------------------------------ > Keep Your Developer Skills Current with LearnDevNow! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-d2d > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Keep Your Developer Skills Current with LearnDevNow! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-d2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
