Is there a difference in the sigma values assigned by pymol and coot????
I am able to see the density at 8 sigma in coot for the Fo-Fc map but can
go to maximum at 4.5 sigma in pymol after which it disappears....
On Mon, Dec 5, 2011 at 11:33 PM, Roger Rowlett <rrowl...@colgate.edu> wrote:
> I think the isomesh command will let you set whatever contour level you
> wish, e.g.:
>
> isomesh map, mymap.map, X.X, maparea
>
> Where map is the name of the mesh object, mymap.map is the map file name,
> X.X is the desired contour level, and maparea, is the selection about which
> you would like to see the electron density mesh. I haven't tested the
> contour limits, but it's larger than 10.
>
> _______________________________________
> Roger S. Rowlett
> Gordon & Dorothy Kline Professor
> Department of Chemistry
> Colgate University
> 13 Oak Drive
> Hamilton, NY 13346
>
> tel: (315)-228-7245
> ofc: (315)-228-7395
> fax: (315)-228-7935
> email: rrowl...@colgate.edu
>
> On 12/5/2011 12:49 PM, Manas Sule wrote:
>
> I have tried that...but i can see the density in coot at even 8 sigma..
> however the maximum i can go to in pymol is 4.5 simga on a F0-Fc map
> Can u suggest any method to see the same density at 6 sigma
>
> Manas
>
> On Mon, Dec 5, 2011 at 11:14 PM, Pete Meyer <pame...@mcw.edu> wrote:
>
>> isomesh [mesh name], [map name], 6.0
>>
>>
>>
>
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