Dear PyMol users! I want to prepare my pdb structure for MD simulation with gromacs
1- I want to place some CAP groups like ACE or NH2 to N and C termii of 1 and last residue of my protein, respectyally. I found possible option for this in the build- amono acids buit creted via this way ACE or NH2 groups were placed in the same label w\o links to specified atoms ( e.g I've selected C atom from 1 residue and tried to build ACE on this place) So how I could merge new groups with existing atoms of the specified residues in desired location? 2- I want to orient my protein along desired axis. How it could be done? Thanks, James
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