I've never tried to use pymol in a powerpoint presentation and I have no idea what disabling security is suppose to do. Did you try to call pymol with the -o argument. This supposedly disables the security of session files. http://www.pymolwiki.org/index.php/Command_Line_Options
Marius GnuPG http://db.tt/rr7Hd0Y On Tue, Aug 23, 2011 at 3:03 PM, Tatyana Sysoeva <[email protected]> wrote: > the same one: > > Traceback (most recent call last): > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", line > 338, in parse > parsing.run_file(path,self.pymol_names,self.pymol_names) > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parsing.py", line > 455, in run_file > execfile(file,global_ns,local_ns) > File "C:\Users\Tanya\pymolrc.py", line 1 > set security, off > ^ > SyntaxError: invalid syntax > > > > Tanya > On Tue, Aug 23, 2011 at 8:58 AM, Marius Retegan <[email protected]> > wrote: >> >> What error to you get this time? >> >> These all work for me >> >> set security, 0 >> set security, off >> set security=off >> >> Marius >> >> GnuPG http://db.tt/rr7Hd0Y >> >> >> >> On Tue, Aug 23, 2011 at 2:53 PM, Tatyana Sysoeva >> <[email protected]> wrote: >> > true, my bad, but it does not work with 0,1,2 etc, as well as set >> > security, >> > off or set security = 0 >> > >> > I am sorry for the wrong file I sent. >> > >> > On Tue, Aug 23, 2011 at 8:51 AM, Marius Retegan >> > <[email protected]> >> > wrote: >> >> >> >> That variable (ray_trace_mode) dows not accept logical values. >> >> http://www.pymolwiki.org/index.php/Ray_trace_mode#Modes >> >> >> >> GnuPG http://db.tt/rr7Hd0Y >> >> >> >> >> >> >> >> On Tue, Aug 23, 2011 at 2:44 PM, Tatyana Sysoeva >> >> <[email protected]> wrote: >> >> > >> >> > Hi Tsjerk, >> >> > >> >> > I am attaching the file and the terminal text. >> >> > >> >> > ++++++++++++++++++++++++++++++++++++++++++++++++ >> >> > This Executable Build integrates and extends Open-Source PyMOL 1.3. >> >> > Traceback (most recent call last): >> >> > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", >> >> > line >> >> > 338, in parse >> >> > parsing.run_file(path,self.pymol_names,self.pymol_names) >> >> > File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parsing.py", >> >> > line >> >> > 455, in run_file >> >> > execfile(file,global_ns,local_ns) >> >> > File "C:\Users\Tanya\pymolrc.py", line 1 >> >> > set ray_trace_mode, on >> >> > ^ >> >> > SyntaxError: invalid syntax >> >> > +++++++++++++++++++++++++++++++++++++++++++++ >> >> > >> >> > Thanks, >> >> > Tanya >> >> > >> >> > >> >> > >> >> > On Tue, Aug 23, 2011 at 12:18 AM, Tsjerk Wassenaar >> >> > <[email protected]> >> >> > wrote: >> >> >> >> >> >> Hi Tanya, >> >> >> >> >> >> Does it say more than "syntax error"? Can you send the whole output? >> >> >> (copy crom the grey screen). In addition, can you send the pymolrc >> >> >> file as attachment? There might be something to do with line >> >> >> endings; >> >> >> so don't paste it in the mail, but attach the actual file that >> >> >> fails. >> >> >> >> >> >> Cheers, >> >> >> >> >> >> Tsjerk >> >> >> >> >> >> On Tue, Aug 23, 2011 at 2:03 AM, Tatyana Sysoeva >> >> >> <[email protected]> wrote: >> >> >> > >> >> >> > Dear all, >> >> >> > >> >> >> > I have quite silly question but I could not find an answer so far. >> >> >> > I am trying to use Pymol in a Power point presentation. For that I >> >> >> > would >> >> >> > like to change the default setting in Pymol - >> >> >> > set security, off >> >> >> > I have created a file pymolrc and put it in C:/Program >> >> >> > Files/PyMol/PyMol/. >> >> >> > When I am launching Pymol, it reads the file, but respond with >> >> >> > "syntax >> >> >> > error". >> >> >> > I checked and the same command is working properly if I type it >> >> >> > directly >> >> >> > into the Pymol prompt. >> >> >> > >> >> >> > I would appreciate any corrections or advices! >> >> >> > Thank you very much, >> >> >> > Tanya >> >> >> > >> >> >> > >> >> >> > >> >> >> > >> >> >> > >> >> >> > ------------------------------------------------------------------------------ >> >> >> > Get a FREE DOWNLOAD! and learn more about uberSVN rich system, >> >> >> > user administration capabilities and model configuration. Take >> >> >> > the hassle out of deploying and managing Subversion and the >> >> >> > tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 >> >> >> > >> >> >> > _______________________________________________ >> >> >> > PyMOL-users mailing list ([email protected]) >> >> >> > Info Page: >> >> >> > https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> >> > Archives: >> >> >> > http://www.mail-archive.com/[email protected] >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Tsjerk A. Wassenaar, Ph.D. >> >> >> >> >> >> post-doctoral researcher >> >> >> Molecular Dynamics Group >> >> >> * Groningen Institute for Biomolecular Research and Biotechnology >> >> >> * Zernike Institute for Advanced Materials >> >> >> University of Groningen >> >> >> The Netherlands >> >> > >> >> > >> >> > >> >> > >> >> > ------------------------------------------------------------------------------ >> >> > Get a FREE DOWNLOAD! and learn more about uberSVN rich system, >> >> > user administration capabilities and model configuration. Take >> >> > the hassle out of deploying and managing Subversion and the >> >> > tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 >> >> > >> >> > _______________________________________________ >> >> > PyMOL-users mailing list ([email protected]) >> >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> > Archives: >> >> > http://www.mail-archive.com/[email protected] >> >> > >> > >> > > > ------------------------------------------------------------------------------ Get a FREE DOWNLOAD! and learn more about uberSVN rich system, user administration capabilities and model configuration. Take the hassle out of deploying and managing Subversion and the tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
