Dear Pymol Users,
I've found a problem with Pymol version 1.4.1. I am using Ubuntu 10.10 in a
laptop with Intel Mobile 4 graphics controller.
The problem comes when I load any PDB file, then try to show it as a
cartoon. It displays the cartoon but in black color, so I cannot see it
unless I turn the background to white. With "lines" it's correctly displayed
but "cartoon" or "sticks" show the same behaviour (colored black).
This only happens if I use the "set use_shaders, 1". If I don't use this
command, the "cartoon" and "stick" are displayed in the right colour, but
then I have problems coloring the sticks (it's a known bug :
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg09181.html
).
I don't know if this is related but immediately after loading the pdb I get
this message in the pymol console :
PyMOL>load FILE.pdb
ObjectMoleculeGuessValences(
1,1): Unreasonable connectivity in heteroatom,
unsuccessful in guessing valences.
Is this a known bug ? Does anybody know what to do ?
Thanks
Regards,
Santiago
By the way, this is a relevant piece of output of my glxinfo command on
linux :
OpenGL vendor string: Tungsten Graphics, Inc
OpenGL renderer string: Mesa DRI Mobile Intel® GM45 Express Chipset GEM
20100330 DEVELOPMENT x86/MMX/SSE2
OpenGL version string: 2.1 Mesa 7.9-devel
------------------------------------------------------------------------------
Got Input? Slashdot Needs You.
Take our quick survey online. Come on, we don't ask for help often.
Plus, you'll get a chance to win $100 to spend on ThinkGeek.
http://p.sf.net/sfu/slashdot-survey
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
