Hi Spyros, In cases like these, I think it's usually best to use colours for the selections and for the overlap:
color cyan, selection1 color yellow, selection2 color hotpink, selection1 and selection2 Hope it helps, Tsjerk On Tue, Jul 12, 2011 at 1:14 AM, Spyros Charonis <s.charo...@gmail.com> wrote: > Hello PyMOLers, > A visualization query: > I have a PDB structure of a GPCR to which I have added two selections, one > where I highlight certain motif sequences extracted from a database, and the > second where I highlight a set > of residues that bind ligands. Because I wish to determine if I can > correlate the database motifs with ligand-binding residues, what I would > like is some way of superimposing (if possible) one selection onto the > other. I would color-code the selections (if possible, again) so that I > could see if one was "on top" of the other in 3D or if they occur at > different regions of the protein. > Creating selections the default way places pixel-size pink dots on the > structure, so I was wondering if there is some way to control this for more > complex visualization tasks? > Is there a way to color-code my selections, and visualize them > simultaneously on the structure to see if there is any overlap? > > Many thanks for your time! > Spyros > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously valuable. > Why? It contains a definitive record of application performance, security > threats, fraudulent activity, and more. Splunk takes this data and makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2d-c2 > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
