Hi Jason & Tsjerk ...
Just for the info that I just downloaded, compiled and tried it on
OpenSuse 11.4 and it ran without any problems:
PyMOL>load ../../3lzt.pdb
HEADER HYDROLASE 23-MAR-97 3LZT
TITLE REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LYSOZYME;
COMPND 3 CHAIN: A;
COMPND 4 EC: 3.2.1.17;
COMPND 5 OTHER_DETAILS: NITRATE AND ACETATE IONS PRESENT
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 1 symmetry operators.
ObjectMoleculeGuessValences(1,0): Unreasonable connectivity in heteroatom,
unsuccessful in guessing valences.
CmdLoad: "../../3lzt.pdb" loaded as "3lzt".
hth,
abhi
On Mon, Apr 11, 2011 at 9:43 AM, Tsjerk Wassenaar <tsje...@gmail.com> wrote:
> Hi Jason,
>
> I run into a segfault with Pymol 1.4 rev 3938 on my EEE PC, running
> Ubuntu 9.04. The segfault occurs when loading the PDB file. It happens
> regardless of the contents of the PDB file, but loading something with
> hetatms gives some insight in how far it goes:
>
> PyMOL>load ../../../3lzt.pdb
> HEADER HYDROLASE 23-MAR-97 3LZT
> TITLE REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION
> COMPND MOL_ID: 1;
> COMPND 2 MOLECULE: LYSOZYME;
> COMPND 3 CHAIN: A;
> COMPND 4 EC: 3.2.1.17;
> COMPND 5 OTHER_DETAILS: NITRATE AND ACETATE IONS PRESENT
> ObjectMolecule: Read secondary structure assignments.
> ObjectMolecule: Read crystal symmetry information.
> Symmetry: Found 1 symmetry operators.
> ObjectMoleculeGuessValences(1,0): Unreasonable connectivity in heteroatom,
> unsuccessful in guessing valences.
> Segmentation fault
>
> If you need any information on libraries or such, let me know.
>
> Best,
>
> Tsjerk
>
> --
> Tsjerk A. Wassenaar, Ph.D.
>
> post-doctoral researcher
> Molecular Dynamics Group
> * Groningen Institute for Biomolecular Research and Biotechnology
> * Zernike Institute for Advanced Materials
> University of Groningen
> The Netherlands
>
>
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It's a major breakthrough. An authentic gaming
smartphone on the nation's most reliable network.
And it wants your games.
http://p.sf.net/sfu/verizon-sfdev
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