Hi Ramiro,
Like you, I would love to see secondary structure colored by helix type. Jmol
however does not show this as a default. Do you know what steps you took to get
Jmol to show secondary structure colored by helix type?
I can't seem to find that setting in any of the menu options.
style/scheme/cartoon
color/structure/cartoon/By Scheme/Secondary Structure
This shows all of the helices in the same color.
Adam
On Apr 6, 2011, at 4:22 AM, Ramiro Téllez Sanz wrote:
> Hi and thanks for reading this.
>
> I have googled for a way to achieve what I want and have gone through
> the wiki, to no avail.
>
> I would like to color in a different way the different helix types:
> alpha, pi and 310. When you open, for instance, 1pyg into Jmol, you get
> distinct colors for each type by default. But if the same pdb file is
> open with PyMOL all helices are treated the same way. Can't PyMOL
> distinguish helix types?
>
> Thanks in advance,
> Ramiro Téllez Sanz
> Dept. Physical Chemistry
> University of Almeria
> Spain
>
> ------------------------------------------------------------------------------
> Xperia(TM) PLAY
> It's a major breakthrough. An authentic gaming
> smartphone on the nation's most reliable network.
> And it wants your games.
> http://p.sf.net/sfu/verizon-sfdev
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
artforscience
H. Adam Steinberg
Artist, Scientist, Developmental Editor
www.artforscience.com
7904 Bowman Rd
Lodi, WI 53555
608/729-5944
------------------------------------------------------------------------------
Xperia(TM) PLAY
It's a major breakthrough. An authentic gaming
smartphone on the nation's most reliable network.
And it wants your games.
http://p.sf.net/sfu/verizon-sfdev
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
