This question fits better the pymol list.
---------- Forwarded message ---------- From: 李雅雯 <yaya_beih...@yahoo.com.cn> Date: 16 August 2010 12:31 Subject: pdb-l: one question about using pymol To: pd...@sdsc.edu Hi, thanks for your attention. I am using pymol to do structural alignment. Pymol will return this sentence " ExecutiveRMS: 4 atoms rejected during cycle 1 (RMS=0.34). ExecutiveRMS: 3 atoms rejected during cycle 2 (RMS=0.27)." while it returns the RMSD value. I do not understand what does this mean. why there are two cycles? 4 atoms rejected? does this mean those 4 atoms are not calculated? Thanks for helping me Yawen TO UNSUBSCRIBE OR CHANGE YOUR SUBSCRIPTION OPTIONS, please see https://lists.sdsc.edu/mailman/listinfo.cgi/pdb-l . ------------------------------------------------------------------------------ This SF.net email is sponsored by Make an app they can't live without Enter the BlackBerry Developer Challenge http://p.sf.net/sfu/RIM-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
