Hi Lisa,

This sounds like another synchronization issue.  Can you try the
solution here and see if it helps:
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07707.html.

Also, after your initial movie is done, you can clear it out with
"mset".  Also check out "mclear" and "mdo".

Cheers,

-- Jason

On Wed, Aug 11, 2010 at 3:15 PM, YunHui Lisa Lin <lisa...@princeton.edu> wrote:
> Hi PyMOLers,
>
> I'm using the "movie.produce()" command to automate the process of saving my 
> movie in several fragments. After saving each part, I need to clear all 
> existing objects in order to load the next set of frames.
> "movie.produce" successfully saves the first movie. However, any subsequent 
> commands (I've tried "delete *" and "reinitialize") don't get carried out. 
> Basically, the loop in my script stops after the first "movie.produce()" 
> command.
>
> If anyone has ever used this command and has suggestions, I would really 
> appreciate your help!
>
> Thanks a lot,
> Lisa
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120

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