On Fri, 09 Jul 2010 16:11:47 -0400 Vivek Ranjan <vran...@gmail.com> wrote:

> Hello,
> 
> I downloaded a pymol script from
> http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ called
> draw_cell.py. I have "Python 2.6.5", numpy version: 1.3.0, I
> downloaded cctbx for unix (self extracting files) and installed cctbx
> in my $HOME/bin/. I have also included the line (.
> "/home/vranjan/bin/cctbx_build/setpaths.sh") in my .bashrc then ran
> the command from another window cctbx.version and found cctbx version
> to be 2010_03_29_2334
> 
> When I type "run draw_celll.py" in pymol window I get the following error:
> ***************************************************************************************
> PyMOL>ls draw_cell.py
>   draw_cell.py
> PyMOL>run draw_cell.py
> Traceback (most recent call last):
>   File "/usr/local/lib/python2.6/dist-packages/pymol/parser.py", line
> 334, in parse
>     parsing.run_file(path,self.pymol_names,self.pymol_names)
>   File "/usr/local/lib/python2.6/dist-packages/pymol/parsing.py", line
> 455, in run_file
>     execfile(file,global_ns,local_ns)
>   File "draw_cell.py", line 3, in <module>
>     from cctbx import uctbx, sgtbx
> ImportError: No module named cctbx
>  PyMOL: normal program termination.
> ******************************************************************************************

You have to make sure that pymol is using the same python as cctbx.  I have
instructions on my website:
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/cctbx

If you need more help than that, let me know.

Cheers,
Rob
-- 
Robert L. Campbell, Ph.D.
Senior Research Associate/Adjunct Assistant Professor 
Botterell Hall Rm 644
Department of Biochemistry, Queen's University, 
Kingston, ON K7L 3N6  Canada
Tel: 613-533-6821            Fax: 613-533-2497
<robert.campb...@queensu.ca>    http://pldserver1.biochem.queensu.ca/~rlc

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