Hi all, Joel's correct: to get the ray traced image to match the viewport, you must set the viewport to the same aspect ratio as the output image:
# setup the viewport viewport 800, 600 # zoom on the visible zoom visible # ray the scene ray 800,600 # scale it up ray 1600, 1200 Cheers, -- Jason On Tue, Jun 22, 2010 at 9:32 PM, Joel Tyndall <joel.tynd...@otago.ac.nz> wrote: > Try setting your Pymol viewer to square dimensions first: > > Viewport 600,600 > > Then try the ray command > > This should work > > Joel > > _________________________________ > Joel Tyndall, PhD > > Senior Lecturer in Medicinal Chemistry > National School of Pharmacy > University of Otago > PO Box 56 Dunedin 9054 > New Zealand > Skype: jtyndall > http://www.researcherid.com/rid/C-2803-2008 > Pukeka Matua > Te Kura Taiwhanga Putaiao > Te Whare Wananga o Otago > Pouaka Poutapeta 56 Otepoti 9054 > Aotearoa > > Ph / Waea +64 3 4797293 > Fax / Waeawhakaahua +64 3 4797034 > > > -----Original Message----- > From: Gudrun Lotze [mailto:gudrun.lo...@gmx.net] > Sent: Wednesday, 23 June 2010 12:30 p.m. > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Question about ray > > Dear Pymol-Users, > > I tried to ray my protein to get a good looking picture. I tried set > ray_trace_mode, 0 and ray 1200, 1200. I always go a square around my > protein and parts where not visible. > How can I get rid of that black border line and how can I ray my > protein so it is on the whole page visible and not in a box cut off. > Thank you and kind regards > Gudrun Lotze > > > ------------------------------------------------------------------------------ > ThinkGeek and WIRED's GeekDad team up for the Ultimate > GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the > lucky parental unit. See the prize list and enter to win: > http://p.sf.net/sfu/thinkgeek-promo > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > ------------------------------------------------------------------------------ > ThinkGeek and WIRED's GeekDad team up for the Ultimate > GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the > lucky parental unit. See the prize list and enter to win: > http://p.sf.net/sfu/thinkgeek-promo > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
