Hi Kristina,
this sometimes happens. I actually don't know why but if you set the
environmental variable ADPLUGIN_NO_OUTPUT_REDIRECT it should not happen
anymore.
Cheers,
Daniel
On Monday 07 June 2010 06:50:49 pm vivat mesin wrote:
> Hi Everyone,
>
> I am troubleshooting my Autodock/Vina Plugin installation, and I am able to
> write the Vina input file, but when I try to run Vina, I get an "Exception
> in thread" error in threading.py, autodock.py, and Tkinter.py. I have
> pasted the error below.
>
> If you have any advice, please let me know. I am running Lucid Lynx Ubuntu
> 10.04, but it is an installation within a loopmounted device (Wubi), so
> this may also be contributing to my problem.
>
> Thank you so much for your help!
>
> Best,
> Kristina
>
>
> Exception in thread Thread-2:
> Traceback (most recent call last):
> File "/home/kristina/Downloads/pymol/ext/lib/python2.5/threading.py",
> line 486, in __bootstrap_inner self.run()
> File "/home/kristina/Downloads/pymol/modules/pmg_tk/startup/autodock.py",
> line 199, in run self.status_line.configure(text = self.log_text)
> File
> "/home/kristina/Downloads/pymol/ext/lib/python2.5/lib-tk/Tkinter.py", line
> 1208, in configure return self._configure('configure', cnf, kw)
> File
> "/home/kristina/Downloads/pymol/ext/lib/python2.5/lib-tk/Tkinter.py", line
> 1199, in _configure self.tk.call(_flatten((self._w, cmd)) +
> self._options(cnf))
> TclError: out of stack space (infinite loop?)
>
>
>
>
>
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--
Dr. Daniel Seeliger
Computational Biomolecular Dynamics Group
Max-Planck-Institute for Biophysical Chemistry
Tel. +49 (0) 551-201-2310
http://wwwuser.gwdg.de/~dseelig
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