Gauri, Alignments in PyMOL this is pretty simple. You can align two proteins with the "align" "super" or "cealign" commands. You can fit proteins using "fit" "intra_fit" and many other commands. Check out the PyMOLWiki's structure alignment category for more information (http://pymolwiki.org/index.php/Category:Structure_Alignment). "help commandName" will get you help for that command, like "help align".
Cheers, -- Jason On Sat, May 8, 2010 at 1:49 PM, gauri misra <[email protected]> wrote: > Hi Everyone, > How to superimpose two structures or sometimes more than two in pymol? > Also, can some analysis pertaining to non covalent interactions be done > using such structural superimposition? > Looking for inputs from community.. > Thanks to all... > > Cheers > Gauri > ------------------------------------------------------------------------------ > > > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) [email protected] (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
