Another idea would be to use enable/disable. Load all the structures and then only have one enabled at a time
load frame1.pdb, morph_frame1 . . . load frame20.pdb, morph_frame20 disable *frame* enable *frame1 take a picture disable *frame1 enable *frame2 take a picture repeat A bit tedious, but very scriptable - write a script to make such a file if you have a lot of frames. Mike On Tue, Jan 12, 2010 at 1:13 PM, Schubert, Carsten [PRDUS] <cschu...@its.jnj.com> wrote: > Hi, > > I am trying to make a movie form a set of morphed pdb files. Currently the > individual files are loaded into the same object with increasing states, all > pdb files contain the SHEET and HELIX record created by dssp. The object is > then displayed as a cartoon. When I loop over the states I noticed that > Pymol only seems to take secondary structure information from the first pdb > file into account. For instance I have a helix which is split into 2 during > the morph, but only displayed as one helix during the animation, albeit a > bit stretched. Loading the individual files produces the right sec. > structure. Any idea how I can convince Pymol to update the cartoon > representation with each frame? > > Cheers, > > Carsten > > ------------------------------------------------------------------------------ > This SF.Net email is sponsored by the Verizon Developer Community > Take advantage of Verizon's best-in-class app development support > A streamlined, 14 day to market process makes app distribution fast and easy > Join now and get one step closer to millions of Verizon customers > http://p.sf.net/sfu/verizon-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
