Maybe I missed it. What particular problem do you have? Please post the error message you get.
Daniel On Thursday 17 September 2009 19:16:13 Kin Sing Stephen Lee wrote: > I have the same problem on loading autodock plugin while i'm using > macpymol 1.1 > > I have installed both numpy and python > > Could you please help me with that? > > Thank you very much > > sing > > > On Sep 17, 2009, at 12:15 PM, pymol-users- > > requ...@lists.sourceforge.net wrote: > > Send PyMOL-users mailing list submissions to > > pymol-users@lists.sourceforge.net > > > > To subscribe or unsubscribe via the World Wide Web, visit > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > or, via email, send a message with subject or body 'help' to > > pymol-users-requ...@lists.sourceforge.net > > > > You can reach the person managing the list at > > pymol-users-ow...@lists.sourceforge.net > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of PyMOL-users digest..." > > > > > > Today's Topics: > > > > 1. Re: load dcd files problem (Hugo G. de Teran) > > 2. pymol autodock plugin (Daniel Seeliger) > > 3. movie.roll in middle of movie (Benjamin Bobay) > > 4. Re: movie.roll in middle of movie (Warren DeLano) > > 5. Grid View of a Group (T. Andrew Binkowski) > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Tue, 15 Sep 2009 15:45:56 +0200 > > From: "Hugo G. de Teran" <hugo.te...@usc.es> > > Subject: Re: [PyMOL] load dcd files problem > > To: Marius Retegan <marius.s.rete...@gmail.com> > > Cc: pymol-users@lists.sourceforge.net > > Message-ID: <4aaf9a94.10...@usc.es> > > Content-Type: text/plain; charset=ISO-8859-1 > > > > I did that now, run again > > pymol setup.py build install > > pymol setup2.py install > > but still the same error ... > > > > Hugo > > > > Marius Retegan wrote: > >> Did you uncomment in setup.py the lines related to VMD support? > >> > >> On Tue, Sep 15, 2009 at 3:07 PM, Hugo G. de Teran > >> > >> <hugo.te...@usc.es> wrote: > >>> Hi, > >>> > >>> I am trying to use the load_traj command to load dcd files. > >>> Holever, I > >>> get the following error: > >>> PyMOL>load_traj ../../1bwb/dc1.dcd, initial, > >>> ObjectMolecule-Error: sorry, VMD Molfile Plugins not compiled into > >>> this > >>> build. > >>> > >>> I have installed pymol from source with the default method (i.e., > >>> python > >>> install scripts) on my opensuse11.1 x86_64 > >>> > >>> Thanks for help, > >>> > >>> Hugo > >>> > >>> > >>> > >>> -- > >>> Hugo G. de Teran, PhD. > >>> "Parga Pondal" Research fellow > >>> Fundaci?n P?blica Galega de Medicina Xen?mica - SERGAS > >>> Santiago de Compostela (SPAIN) > >>> > >>> Phone +34 981563100 ext 13873 > >>> e-mail:hugo.te...@usc.es <e-mail%3ahugo.te...@usc.es> > >>> http://web.usc.es/~hugogdt <http://web.usc.es/%7Ehugogdt> > >>> > >>> > >>> > >>> > >>> ----------------------------------------------------------------------- > >>>------- Come build with us! The BlackBerry® Developer Conference in > >>> SF, CA > >>> is the only developer event you need to attend this year. > >>> Jumpstart your > >>> developing skills, take BlackBerry mobile applications to market > >>> and stay > >>> ahead of the curve. Join us from November 9-12, 2009. Register > >>> now! > >>> http://p.sf.net/sfu/devconf > >>> _______________________________________________ > >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > >> --0016e6db2dbbff30f304739dc03a > >> Content-Type: text/html; charset=O-8859-1 > >> Content-Transfer-Encoding: quoted-printable > >> > >> Did you uncomment in setup.py the lines related to VMD support? > >> <br><br><div class="gmail_quote">On Tue, Sep 15, 2009 at 3:07 PM, > >> Hugo G. de Teran <span dir="ltr"><<a href="mailto:hugo.te...@usc.es > >> ">hDelivered-To: hugo...@gmail.com > >> Received: by 10.103.221.10 with SMTP id y10cs111217muq; > >> Tue, 15 Sep 2009 06:29:04 -0700 (PDT) > >> Received: by 10.211.171.14 with SMTP id y14mr8459245ebo. > >> 58.1253021301179; > >> Tue, 15 Sep 2009 06:28:21 -0700 (PDT) > >> Return-Path: <marius.s.rete...@gmail.com> > >> Received: from rojo2.usc.es (rojo2.usc.es [193.144.75.10]) > >> by mx.google.com with ESMTP id 25si5396218ewy. > >> 39.2009.09.15.06.28.19; > >> Tue, 15 Sep 2009 06:28:20 -0700 (PDT) > >> Received-SPF: neutral (google.com: 193.144.75.10 is neither > >> permitted nor denied by domain of marius.s.rete...@gmail.com) > >> client-ip3.144.75.10; > >> Authentication-Results: mx.google.com; spf=utral (google.com: > >> 193.144.75.10 is neither permitted nor denied by domain of > >> marius.s.rete...@gmail.com ) smtp.mail=marius.s.rete...@gmail.com; > >> dkim=pass (test mode) header...@gmail.com Received: from localhost > >> (rojo2 [127.0.0.1]) > >> by rojo2.usc.es (Postfix) with ESMTP id 2291E464A5F > >> for <hugo...@gmail.com>; Tue, 15 Sep 2009 15:28:16 +0200 (CEST) > >> X-Virus-Scanned: amavisd-new at usc.es > >> Received: from rojo2.usc.es ([127.0.0.1]) > >> by localhost (rojo2.usc.es [127.0.0.1]) (amavisd-new, port > >> 10024) > >> with ESMTP id 6KotJbBytw00 for <hugo...@gmail.com>; > >> Tue, 15 Sep 2009 15:28:16 +0200 (CEST) > >> Received: from oro1.usc.es (oro1.usc.es [193.144.75.8]) > >> by rojo2.usc.es (Postfix) with ESMTP id F357A464A3D > >> for <hugo...@gmail.com>; Tue, 15 Sep 2009 15:28:15 +0200 (CEST) > >> Received: by oro1.usc.es (Postfix, from userid 100) > >> id 712C23A02D; Tue, 15 Sep 2009 15:28:19 +0200 (CEST) > >> Received: from oro1.usc.es ([unix socket]) > >> by oro1 (Cyrus v2.1.18-IPv6-Debian-2.1.18-1+sarge2) with LMTP; > >> Tue, 15 Sep 2009 15:28:19 +0200 > >> X-Sieve: CMU Sieve 2.2 > >> Received: from rojo3.usc.es (rojo3.usc.es [193.144.75.13]) > >> by oro1.usc.es (Postfix) with ESMTP id 4F4023A02B > >> for <hugo.te...@usc.es>; Tue, 15 Sep 2009 15:28:19 +0200 (CEST) > >> Received: from localhost (localhost.localdomain [127.0.0.1]) > >> by rojo3.usc.es (Postfix) with ESMTP id E285C3C184 > >> for <hugo.te...@usc.es>; Tue, 15 Sep 2009 15:28:18 +0200 (CEST) > >> X-Virus-Scanned: amavisd-new at usc.es > >> X-Spam-Score: 1.44 > >> X-Spam-Level: * > >> X-Spam-Status: No, score=44 tagged_above=-999 required=5 > >> tests=[DNS_FROM_RFC_POST=1.44, HTML_MESSAGE=0.001, > >> SPF_PASS=-0.001] > >> Received: from rojo3.usc.es ([127.0.0.1]) > >> by localhost (rojo3.usc.es [127.0.0.1]) (amavisd-new, port > >> 10024) > >> with ESMTP id 9yKch60LhdRg for <hugo.te...@usc.es>; > >> Tue, 15 Sep 2009 15:28:12 +0200 (CEST) > >> Received: from mail-ew0-f216.google.com (mail-ew0-f216.google.com > >> [209.85.219.216]) > >> by rojo3.usc.es (Postfix) with ESMTP id AC3593C1B9 > >> for <hugo.te...@usc.es>; Tue, 15 Sep 2009 15:28:12 +0200 (CEST) > >> Received: by ewy12 with SMTP id 12so4300853ewy.0 > >> for <hugo.te...@usc.es>; Tue, 15 Sep 2009 06:28:12 -0700 (PDT) > >> DKIM-Signature: v= a=rsa-sha256; c=relaxed/relaxed; > >> d=ail.com; s=gamma; > >> h=mainkey-signature:mime-version:received:in-reply- > >> to:references > >> > >> :date:message-id:subject:from:to:content-type; > >> > >> bh=OLbqHC0blM/1hvR9WlwEyAGmJc0RFi5NiQ9Vs6oHM=; > >> b=tDlCRIOw67VCrGxS1tDteIVhye1d75rnDoKsYR/f6TBCcnUAt > >> +o3fgOee8amIGnxPq > >> dGXhRdZvsW53M9azY > >> +R7ZiZtaYeVQryOWdNK00sRUZ2pNeZoqUQ7NVp6+p8gmlLHQ039 > >> SucgLJXZfy5AH5ghpu24zOb4Puw+4eCVMqEW8DomainKey-Signature: > >> a=rsa-sha1; c=nofws; > >> d=ail.com; s=gamma; > >> h=me-version:in-reply-to:references:date:message- > >> id:subject:from:to > >> > >> :content-type; > >> > >> b=wrAsR/GRRaZMt > >> +sfbot3Ri4D26dbi1FU57bLRtLNCChSkaP0LE5XOLvP0xDM9V0d > >> Svrfo9UTldq4c5wfStz2vzvfhAIfIsbdWUyfrFNQYR > >> +RgmtiokDIrQxjOVXMvEvQofyu > >> q/SaB6w7rgBVUxCZHo9DXsHRIkNaQcbhcKoxQMIME-Version: 1.0 > >> Received: by 10.216.89.138 with SMTP id c10mr1978084wef. > >> 47.1253021291851; Tue, > >> 15 Sep 2009 06:28:11 -0700 (PDT) > >> In-Reply-To: <4aaf9176.8090...@usc.es> > >> References: <4aaf9176.8090...@usc.es> > >> Date: Tue, 15 Sep 2009 15:28:11 +0200 > >> Message-ID: <52298ae10909150628j5a6f1ad8i6ca8664e2c47f...@mail.gmail.com > >> > >> Subject: Re: [PyMOL] load dcd files problem > >> From: Marius Retegan <marius.s.rete...@gmail.com> > >> To: "Hugo G. de Teran" <hugo.te...@usc.es> > >> Content-Type: multipart/alternative; boundary > >> --0016e6db2dbbff30f304739dc03a > >> Content-Type: text/plain; charset=O-8859-1 > >> Content-Transfer-Encoding: quoted-printable > >> > >> Did you uncomment in setup.py the lines related to VMD support? > >> > >> On Tue, Sep 15, 2009 at 3:07 PM, Hugo G. de Teran > >> > >> <hugo.te...@usc.es> wrote: > >>> Hi, > >>> > >>> I am trying to use the load_traj command to load dcd files. > >>> Holever, I > >>> get the following error: > >>> PyMOL>load_traj ../../1bwb/dc1.dcd, initial, > >>> ObjectMolecule-Error: sorry, VMD Molfile Plugins not compiled into > >>> this > >>> build. > >>> > >>> I have installed pymol from source with the default method (i.e., > >>> python > >>> install scripts) on my opensuse11.1 x86_64 > >>> > >>> Thanks for help, > >>> > >>> Hugo > >>> > >>> > >>> > >>> -- > >>> Hugo G. de Teran, PhD. > >>> "Parga Pondal" Research fellow > >>> Fundaci?n P?blica Galega de Medicina Xen?mica - SERGAS > >>> Santiago de Compostela (SPAIN) > >>> > >>> Phone +34 981563100 ext 13873 > >>> e-mail:hugo.te...@usc.es <e-mail%3ahugo.te...@usc.es> > >>> http://web.usc.es/~hugogdt <http://web.usc.es/%7Ehugogdt> > >>> > >>> > >>> > >>> > >>> ----------------------------------------------------------------------- > >>>------- Come build with us! The BlackBerry® Developer Conference in > >>> SF, CA > >>> is the only developer event you need to attend this year. > >>> Jumpstart your > >>> developing skills, take BlackBerry mobile applications to market > >>> and stay > >>> ahead of the curve. Join us from November 9-12, 2009. Register > >>> now! > >>> http://p.sf.net/sfu/devconf > >>> _______________________________________________ > >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > >> --0016e6db2dbbff30f304739dc03a > >> Content-Type: text/html; charset=O-8859-1 > >> Content-Transfer-Encoding: quoted-printable > >> > >> Did you uncomment in setup.py the lines related to VMD support? > >> <br><br><div class="gmail_quote">On Tue, Sep 15, 2009 at 3:07 PM, > >> Hugo G. de Teran <span dir="ltr"><<a href="mailto:hugo.te...@usc.es > >> ">hugo.te...@usc.es</a>></span> wrote:<br> > >> <blockquote class="gmail_quote" style="border-left: 1px solid > >> rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: > >> 1ex;">Hi,<br> > >> <br> > >> I am trying to use the load_traj command to load dcd files. > >> Holever, I<br> > >> get the following error:<br> > >> PyMOL>load_traj ../../1bwb/dc1.dcd, initial,<br> > >> ObjectMolecule-Error: sorry, VMD Molfile Plugins not compiled into > >> this<br> > >> build.<br> > >> <br> > >> I have installed pymol from source with the default method (i.e., > >> python<br> > >> install scripts) on my opensuse11.1 x86_64<br> > >> <br> > >> Thanks for help,<br> > >> <br> > >> Hugo<br> > >> <br> > >> <br> > >> <br> > >> --<br> > >> Hugo G. de Teran, PhD.<br> > >> "Parga Pondal" Research fellow<br> > >> Fundaci?n P?blica Galega de Medicina Xen?mica - SERGAS<br> > >> Santiago de Compostela (SPAIN)<br> > >> <br> > >> Phone +34 981563100 ext 13873<br> > >> <a href="mailto:e-mail%3ahugo.te...@usc.es";>e- > >> mail:hugo.te...@usc.es</a> <a href="http://web.usc.es/%7Ehugogdt > >> " target="_blank">http://web.usc.es/~hugogdt</a><br> > >> <br> > >> <br> > >> <br> > >> ------------------------------------------------------------------------ > >>------< br> > >> Come build with us! The BlackBerry&reg; Developer Conference in > >> SF, CA<br> > >> is the only developer event you need to attend this year. Jumpstart > >> your<br> > >> developing skills, take BlackBerry mobile applications to market > >> and stay<br> > >> ahead of the curve. Join us from November 9&#45;12, 2009. > >> Register now&#33;<br> > >> <a href="http://p.sf.net/sfu/devconf"; > >> target="_blank">http://p.sf.net/sfu/devconf </a><br> > >> _______________________________________________<br> > >> PyMOL-users mailing list (<a > >> href="mailto:PyMOL-users@lists.sourceforge.net > >> ">PyMOL-users@lists.sourceforge.net</a>)<br> > >> Info Page: <a > >> href="https://lists.sourceforge.net/lists/listinfo/pymol-users " > >> target="_blank">https://lists.sourceforge.net/lists/listinfo/pymol-users > >> </a><br> > >> Archives: <a > >> href="http://www.mail-archive.com/pymol-users@lists.sourceforge.net " > >> target="_blank">http://www.mail-archive.com/pymol-us...@lists.sourceforg > >>e.net </a><br> > >> </blockquote></div><br> > >> > >> --0016e6db2dbbff30f304739dc03a-- > > > > -- > > Hugo G. de Teran, PhD. > > "Parga Pondal" Research fellow > > Fundaci?n P?blica Galega de Medicina Xen?mica - SERGAS > > Santiago de Compostela (SPAIN) > > > > Phone +34 981563100 ext 13873 > > e-mail:hugo.te...@usc.es http://web.usc.es/~hugogdt > > > > > > > > > > > > ------------------------------ > > > > Message: 2 > > Date: Wed, 16 Sep 2009 22:09:02 +0200 > > From: Daniel Seeliger <dsee...@gwdg.de> > > Subject: [PyMOL] pymol autodock plugin > > To: pymol-users@lists.sourceforge.net > > Message-ID: <200909162209.02183.dsee...@gwdg.de> > > Content-Type: text/plain; charset="iso-8859-1" > > > > Dear PyMOLers, > > > > there is a new version of the plugin on the web > > (http://wwwuser.gwdg.de/~dseelig/adplugin.html). > > > > It contains a bunch of new features, like: > > - setup and execution of complete docking runs > > - support for VINA (http://vina.scripps.edu), a great new Autodock > > spawn > > - viewing of Autodock grid maps in PyMOL > > - some lightweight virtual screening functionality > > > > So far it's only tested on Linux and by myself so I expect it to be > > somewhat > > buggy and unstable. Therefore please report bugs. > > > > Cheers, > > Daniel > > > > On Thursday 13 August 2009 22:36:14 Warren DeLano wrote: > >> Jed, > >> > >> With the 1.2 release of PyMOL, we have completely switched over to > >> Numpy. So the first thing to try is to replace: > >> > >> from Numeric import * > >> > >> # with > >> > >> from numpy import * > >> > >> Cheers, > >> Warren > >> > >>> -----Original Message----- > >>> From: Jed Goldstone [mailto:jedg...@mit.edu] > >>> Sent: Thursday, August 13, 2009 1:34 PM > >>> To: pymol-users@lists.sourceforge.net > >>> Subject: [PyMOL] pymol autodock plugin > >>> > >>> The autodock plugin written by Daniel Seeliger ceased to function > >> > >> (load) > >> > >>> when I upgraded to Pymol 1.2r1. > >>> Although it is not compatible directly with Autodock 4, it did have > >> > >> the > >> > >>> useful functionality of > >>> presenting an autodock 'box' that was readily tweakable, so that the > >>> parameters could be exported for > >>> Autodock Vina. I would LOVE to have this resurrected, but I don't > >>> know > >>> python - can anybody help with this? > >>> > >>> The specific failures I got were: > >>> > >>> File "C:\Program Files\PyMOL/modules\pmg_tk\startup\autodock.py", > >>> line > >> > >> 16, > >> > >>> in <module> > >>> from Numeric import * > >>> ImportError: No module named Numeric > >>> Error: unable to initialize plugin 'autodock'. > >>> > >>> > >>> Any help would be greatly appreciated. > >>> > >>> Jed > >> > >> ------------------------------------------------------------------------ > >> -- > >> > >>> ---- > >>> Jed Goldstone > >>> Research Specialist > >>> Woods Hole Oceanographic Institution > >>> Redfield 3-52 MS #32 > >>> Woods Hole, MA 02543 > >>> http://www.mit.edu/people/jedgold/home.html > >>> (508) 685-2253 (cell/home) (508) 289-4823 (work/WHOI) > >> > >> ------------------------------------------------------------------------ > >> -- > >> > >>> ---- > >>> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 > >> > >> 30- > >> > >>> Day > >>> trial. Simplify your report design, integration and deployment - and > >> > >> focus > >> > >>> on > >>> what you do best, core application coding. Discover what's new with > >>> Crystal Reports now. http://p.sf.net/sfu/bobj-july > >>> _______________________________________________ > >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >>> Archives: > >> > >> http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > >> > >> > >> > >> > >> > >> ------------------------------------------------------------------------ > >>--- --- Let Crystal Reports handle the reporting - Free Crystal Reports > >> 2008 > >> 30-Day trial. Simplify your report design, integration and > >> deployment - and > >> focus on what you do best, core application coding. Discover what's > >> new > >> with Crystal Reports now. http://p.sf.net/sfu/bobj-july > >> _______________________________________________ > >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > -- > > Dr. Daniel Seeliger > > Computational Biomolecular Dynamics Group > > Max-Planck-Institute for Biophysical Chemistry > > Am Fassberg 11 > > 37077 Goettingen, Germany > > Tel: +49 551 201 2310 > > Fax: +49 551 201 2302 > > email: dsee...@gwdg.de > > web: http://wwwuser.gwdg.de/~dseelig > > > > > > > > ------------------------------ > > > > Message: 3 > > Date: Wed, 16 Sep 2009 12:47:51 -0400 > > From: Benjamin Bobay <ben.bo...@gmail.com> > > Subject: [PyMOL] movie.roll in middle of movie > > To: pymol-users@lists.sourceforge.net > > Message-ID: <332477e8-3896-4833-bc0c-648bfbddd...@gmail.com> > > Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes > > > > Good afternoon all - > > > > I think I have a simple question. I would like to have a series of > > "zooms" followed by a movie.roll and then zooming back to the start > > position. Here is what I have > > > > cmd.mset("1 x800") > > cmd.zoom("center","200") > > cmd.frame("1") > > cmd.mview("store") > > cmd.zoom("center","50") > > cmd.frame("120") > > cmd.mview("store") > > cmd.frame("180") > > cmd.mview("store") > > cmd.zoom("center","15") > > cmd.frame("280") > > cmd.mview("store") > > cmd.frame("360") > > cmd.mview("store") > > cmd.zoom("center","50") > > cmd.frame("400") > > cmd.mview("store") > > cmd.frame("420") > > cmd.mview("store") > > cmd.movie.roll("421","755") > > cmd.mview("store") > > cmd.frame("756") > > cmd.mview("store") > > cmd.zoom("center","200") > > cmd.frame("800") > > cmd.mview("reinterpolate") > > > > The problem is that is does not do the movie.roll and as the movie > > plays over and over it actually performs all the zoom actions and then > > rotates one frame and then starts the process again from that newly > > rotated frame. > > > > I would like it to perform the full rotation after the initial zoom > > and then perform the final zoom command. > > > > Any ideas where I might have messed this up? > > > > Many thanks > > Ben > > > > > > > > ------------------------------ > > > > Message: 4 > > Date: Wed, 16 Sep 2009 21:05:36 -0700 > > From: "Warren DeLano" <war...@delsci.com> > > Subject: Re: [PyMOL] movie.roll in middle of movie > > To: "Benjamin Bobay" <ben.bo...@gmail.com>, > > <pymol-users@lists.sourceforge.net> > > Message-ID: > > <896b75251ba19745a529b1b867893fa50eb...@planet.delsci.local> > > Content-Type: text/plain; charset="us-ascii" > > > > Note that this kind of stuff is much easier in PyMOL 1.2 without any > > scripting. > > > > (ScreenCasts for PyMOL Sponsors at http://delsci.info/id/media:new12 > > under "Complex Movie Creation" -- login first). > > > > Nevertheless, a possible answer is below: > > > > Cheers, > > Warren > > > > # PyMOL .pml file (tested against PyMOL 1.2) > > > > load $PYMOL_PATH/test/dat/1tii.pdb > > > > unset movie_auto_interpolate > > unset movie_loop > > > > mset 1 x800 > > > > zoom center,200 > > frame 1 > > mview store > > > > zoom center,50 > > frame 120 > > mview store > > frame 180 > > mview store > > > > zoom center,15 > > frame 280 > > mview store > > frame 360 > > mview store > > > > zoom center,50 > > frame 400 > > mview store > > frame 420 > > mview store > > > > mview interpolate > > > > # instead of: movie.roll 421,755 > > > > frame 531 > > turn y,120 > > mview store > > > > frame 642 > > turn y,120 > > mview store > > > > frame 756 > > turn y,120 > > mview store > > mview interpolate, power=1 > > > > zoom center,200 > > frame 800 > > > > set movie_loop > > mview interpolate > > > > mview smooth > > > > mplay > > > >> -----Original Message----- > >> From: Benjamin Bobay [mailto:ben.bo...@gmail.com] > >> Sent: Wednesday, September 16, 2009 8:41 PM > >> To: pymol-users@lists.sourceforge.net > >> Subject: [PyMOL] movie.roll in middle of movie > >> > >> Good afternoon all - > >> > >> I think I have a simple question. I would like to have a series of > >> "zooms" followed by a movie.roll and then zooming back to the start > >> position. Here is what I have > >> > >> cmd.mset("1 x800") > >> cmd.zoom("center","200") > >> cmd.frame("1") > >> cmd.mview("store") > >> cmd.zoom("center","50") > >> cmd.frame("120") > >> cmd.mview("store") > >> cmd.frame("180") > >> cmd.mview("store") > >> cmd.zoom("center","15") > >> cmd.frame("280") > >> cmd.mview("store") > >> cmd.frame("360") > >> cmd.mview("store") > >> cmd.zoom("center","50") > >> cmd.frame("400") > >> cmd.mview("store") > >> cmd.frame("420") > >> cmd.mview("store") > >> cmd.movie.roll("421","755") > >> cmd.mview("store") > >> cmd.frame("756") > >> cmd.mview("store") > >> cmd.zoom("center","200") > >> cmd.frame("800") > >> cmd.mview("reinterpolate") > >> > >> The problem is that is does not do the movie.roll and as the movie > >> plays over and over it actually performs all the zoom actions and > >> then > >> rotates one frame and then starts the process again from that newly > >> rotated frame. > >> > >> I would like it to perform the full rotation after the initial zoom > >> and then perform the final zoom command. > >> > >> Any ideas where I might have messed this up? > >> > >> Many thanks > >> Ben > > > > ------------------------------------------------------------------------ > > -- > > > >> ---- > >> Come build with us! The BlackBerry® Developer Conference in SF, > >> CA > >> is the only developer event you need to attend this year. Jumpstart > > > > your > > > >> developing skills, take BlackBerry mobile applications to market and > > > > stay > > > >> ahead of the curve. Join us from November 9-12, 2009. Register > >> now! > >> http://p.sf.net/sfu/devconf > >> _______________________________________________ > >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> Archives: > > > > http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > > > > > > > > > > > > > > ------------------------------ > > > > Message: 5 > > Date: Thu, 17 Sep 2009 11:03:03 -0500 > > From: "T. Andrew Binkowski" <abinkow...@anl.gov> > > Subject: [PyMOL] Grid View of a Group > > To: pymol-users@lists.sourceforge.net > > Message-ID: <0b8f4830-340c-466e-8bf3-bbf416104...@anl.gov> > > Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes > > > > Hi, > > I noticed that in the Grid view that a group of objects is in each > > view. > > > > For example: > > Group A has protein1, protein2 and protein 3. > > Group B has protein 4 and protein 5. > > > > In the grid view there are two views:Group A and GroupB. Is it > > possible to have the grid view have 5 views, one of each molecule? > > > > Thanks, > > Andrew > > > > > > > > > > ------------------------------ > > > > ------------------------------------------------------------------------- > >----- Come build with us! The BlackBerry® Developer Conference in SF, > > CA is the only developer event you need to attend this year. Jumpstart > > your > > developing skills, take BlackBerry mobile applications to market and > > stay > > ahead of the curve. Join us from November 9-12, 2009. Register > > now! > > http://p.sf.net/sfu/devconf > > > > ------------------------------ > > > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > > End of PyMOL-users Digest, Vol 40, Issue 12 > > ******************************************* > > --------------------------------------------------------------------------- >--- Come build with us! The BlackBerry® Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart your > developing skills, take BlackBerry mobile applications to market and stay > ahead of the curve. Join us from November 9-12, 2009. Register now! > http://p.sf.net/sfu/devconf > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Dr. Daniel Seeliger Computational Biomolecular Dynamics Group Max-Planck-Institute for Biophysical Chemistry Am Fassberg 11 37077 Goettingen, Germany Tel: +49 551 201 2310 Fax: +49 551 201 2302 email: dsee...@gwdg.de web: http://wwwuser.gwdg.de/~dseelig ------------------------------------------------------------------------------ Come build with us! The BlackBerry® Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9-12, 2009. Register now! http://p.sf.net/sfu/devconf _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
