Jose,
Yes, you need to override the object-specific transparency specification from
the preset:
unset transparency, object-name
Cheers,
Warren
________________________________
From: Duca, Jose [mailto:jose.d...@spcorp.com]
Sent: Wed 8/19/2009 10:33 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Transparent surfaces and presets
Has anybody else played with presets and transparent surfaces?
When I do preset -> ligand site -> cartoon and then try to create a surface on
top of it, the surface cannot be shown as transparent; while if you try other
presets surface transparency seems to work OK.
Is there a reason for this behavior or is this a bug?
Thanks,
José
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