Hello,
I am using PyMOL 1.1beta4 Education Edition to calculate the RMSD among
each individual sidechain in two structures. The two structures have
the same number of residues and types, and are just two forms of the
protein. When I use 'align':
PyMOL>align protein1, protein2
it does move protein1 to the same region in space, as best it can, as protein2
but it does not report the RMSD values.
I followed your instructions and also tried 'rms' and 'rms_cur' as indicated on
this webpage:
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg06741.html
but it also does nnot report the RMSD values, though the mapping of the values
does appear as yellow lines.
Any help on getting these RMSD values, particularly for the sidechains would be
appreciated!
Thank
you,
Katie
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