Dear All, Thanks to everyone who replied to my query about extracting an amino acid sequence from a PDB file!
Here is a summary of responses of my query; 1. Use SwissPDBViewer 2. Use Pymol 1.2 load $TUT/1hpv.pdb save 1hpv.fasta # or by selection save 1hpv_A.fasta, chain A 3. With Phenix, you can use the "phenix.print_sequence" tool to output the sequence in FASTA format. 4. If the PDB file is in the PDB, you can download the primary sequence from here. 5. Use MOLEMAN2 6. Use PDBSET (part of CCP4) All the best, ---Buz ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
