Hi All,

I'm having some trouble fitting to sets of residues in Pymol (1.2r0 -  
installed with Fink on MacOSX 10.5.8). I'm also having almost  
identical trouble using MacPymol as well (the version based on Pymol  
1.1).

I'm trying to align 2 sets of 4 cysteine residues. I have tried align,  
super and cealign. In each case, pymol fails to align the selections.

Here is a sample of the error output:

PyMOL>align Fam2_36169_Catalytic_Cys, CpI_Catalytic_Cys
  Match: read scoring matrix.
  Match: assigning 4 x 4 pairwise scores.
  MatchAlign: aligning residues (4 vs 4)...
  ExecutiveAlign-Error: atomic alignment failed (mismatched  
identifiers?).

Alternatively;

PyMOL>super Fam2_36169_Catalytic_Cys, CpI_Catalytic_Cys
  MatchAlign: aligning residues (4 vs 4)...
  ExecutiveAlign-Error: atomic alignment failed (mismatched  
identifiers?).

Could anyone help me with a workaround to this problem?

Thanks! and all the best,

-Buz



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