Robert & Joseph: I just updated and tested both of the distutils and autotools open-source build systems to match the current source -- you should be good to go.
please "svn update" and retry Cheers, Warren > -----Original Message----- > From: Robert Campbell [mailto:robert.campb...@queensu.ca] > Sent: Tuesday, July 07, 2009 9:04 AM > To: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] Pymol build from source > > Dear Joseph, > > On Tue, 07 Jul 2009 11:00:10 +0200, Andre Joseph <andrejos...@gmail.com> > wrote: > > > Dear Delano Scientific support > > > > I've been fetching source code from the sourceforge repositories > yesterday. > > I've no error or warning during "./configure", "make" or "make install" > > steps. > > However, when I launch pymol, I've the following error: > > > > Traceback (most recent call last): > > > File "/home/joseph/software/pymol/modules/launch_pymol.py", line 32, > in > > > <module> > > > import pymol > > > File "/home/joseph/software/pymol/modules/pymol/__init__.py", line > 472, > > > in <module> > > > import _cmd > > > ImportError: /home/joseph/software/pymol/modules/pymol/_cmd.so: > undefined > > > symbol: molfile_vaspparchgplugin_init > > > > > > I've found in the archive that it might come from a problem in > "setup.py" > > file but I couldn't figure out what was missing > (http://tinyurl.com/ndpafb). > > I've been building PyMOL from source for a year or so and never faced up > any > > problem. Could it come from the sources or is a problem of dependancies? > > I think the recommended way of building PyMOL is with these commands (see > the "INSTALL" file): > > python setup.py build > python setup.py install > python setup2.py install > > Since I install it in a non-standard location (an NFS file server > accessible > from many workstations of both i686 and x86_64 versions of Linux), I add a > prefix to the install command: > > python setup.py install --prefix=/software/Linux > > or > > python setup.py install --prefix=/software/Linux_x86_64 > > > Then I keep a saved and modified copy of the pymol script created by the > "python setup2.py install" command and copy that back over the newly > created > "pymol" script instead (because I have a few customizations in it). > > Cheers, > Rob > -- > Robert L. Campbell, Ph.D. > Senior Research Associate/Adjunct Assistant Professor > Botterell Hall Rm 644 > Department of Biochemistry, Queen's University, > Kingston, ON K7L 3N6 Canada > Tel: 613-533-6821 Fax: 613-533-2497 > <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc > > ------------------------------------------------------------------------ -- > ---- > Enter the BlackBerry Developer Challenge > This is your chance to win up to $100,000 in prizes! For a limited time, > vendors submitting new applications to BlackBerry App World(TM) will have > the opportunity to enter the BlackBerry Developer Challenge. See full > prize > details at: http://p.sf.net/sfu/blackberry > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > ------------------------------------------------------------------------------ Enter the BlackBerry Developer Challenge This is your chance to win up to $100,000 in prizes! For a limited time, vendors submitting new applications to BlackBerry App World(TM) will have the opportunity to enter the BlackBerry Developer Challenge. See full prize details at: http://p.sf.net/sfu/blackberry _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
