> By the way, can I select specific states to change their color? Not generally, although certain representation-specific settings may be addressable on a per-state basis (albeit homogenously -- the same for all atoms present in that state). load $PYMOL_PATH/test/dat/ligs3d.sdf set line_color, white, ligs3d, 1 set line_color, red, ligs3d, 2 Cheers, Warren ________________________________
From: Young-Tae Lee [mailto:yt...@scripps.edu] Sent: Tue 4/14/2009 10:21 AM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Alignment of states Well, this was easily figured out by just aligning all intermediate states onto the very initial structure. By the way, can I select specific states to change their color? Thanks, Young-Tae On Apr 13, 2009, at 6:41 PM, Young-Tae Lee wrote: Dear all, I am working on making a movie showing protein movements, for example from A -> B -> C -> D. I obtained calculated intermediate states between A-B, B-C, C-D from the morph server at Yale. Unfortunately, the last coordinate from one morphing step and the first coordinate from the next morphing step were not aligned, although I uploaded the aligned coordinates of A, B, C, and D to the morph server. I would like to know how to align the coordinates properly so that movie would show continuous movement of molecule from A to D. Thanks, Young-Tae Young-Tae Lee, Ph. D. Research Associate David Goodin lab Dept. of Molecular Biology The Scripps Research Institute ------------------------------------------------------------------------------ This SF.net email is sponsored by: High Quality Requirements in a Collaborative Environment. Download a free trial of Rational Requirements Composer Now! http://p.sf.net/sfu/www-ibm-com_______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
