Dear PyMOL list,
I am trying to visualise 20 docked ligand conformations using PyMOL. I
have been opening PyMOL as the GUI, setting up a view of my protein,
and then running the following script to load my ligand conformations:
load conformer000.pdb, conf0
load conformer001.pdb, conf1
load conformer002.pdb, conf2
etc...
However the script seems to also invoke the following commands which
screw up my pretty picture:
PyMOL>show cartoon
PyMOL>util.cbac
Executive: Colored 9 atoms.
Executive: Colored 2 atoms.
PyMOL>set cartoon_discrete_colors,1
Setting: cartoon_discrete_colors set to on.
PyMOL>set cartoon_smooth_loops, 0
Setting: cartoon_smooth_loops set to off.
PyMOL>set cartoon_flat_sheets, 0
Setting: cartoon_flat_sheets set to off.
PyMOL>set valence,1
Setting: valence set to on.
PyMOL>set stick_ball,1
Setting: stick_ball set to on.
PyMOL>orient
PyMOL>context_info=m4x.get_context_info()
PyMOL>m4x.setup_contexts(context_info)
Is there anyway of making the script JUST load the conformations and
not change these other settings?
Thanks,
Simon
