Dear pymol user
I have measured distances between residues and peptide using following
commands:
distance HB, resi 136 and name ND2, resi 583 and name OD2
distance HB, resi 135 and name ND2, resi 584 and name OD2
distance HB, resi 135 and name O, resi 584 and name NH2
so the object name is same (HB) with dashes between these two residue. Now i
want to delete this: distance HB, resi 136 and name ND2, resi 583 and name
OD2)
I tried hide, remove , delete command. but could not work. If i do hide
dashes or delete HB, then all dashes will be gone. Is it possible to
selectively delete particular dashes.
One more question:
I am trying to generate images for publication. I want to capture snapshot
of binding site during different simulation. say i have pdb structures at 0,
20, 40 60 and 80 ps. The binding site of protein undergoes significant
movement. so, i want to show this movement in the image. Say if i know the X
Y Z position of the protein in pymol at 0 ps and if i can adjust this
postion for 20, 40---80 ps, i think i can able to show the movement of
residues of my interest in the image. Is it possible in pymol. Please let me
know how should i do it.
I hope i have made my self clear. Please let me know if more explanation is
needed
--
Falgun H shah
PhD candidate (3rd year)
Department of Medicinal Chemistry
2028, Natural Product Center
University of Mississippi
Ph No: 6629151286(O)
662 801 5667(M)
email: fhs...@olemiss.edu
