Michael, Hmm...I see.
This problem arises from the differences which exist between running PyMOL with an embedded interpreter -- PyMOL should do more to smooth out these differences... But in the meantime, as a workaround, fall back on __main__.pymol_argv if sys.argv is not defined. Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:del...@delsci.info "Not yet a PyMOL Subscriber, but want to support the project? Email sa...@delsci.com to quote your lab, school, or employer. Thank you for sponsoring this open-source endeavor!" -WLD > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > Of Michael Lerner > Sent: Tuesday, August 14, 2007 2:35 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Why can't I get to sys.argv on Linux? > > Hi, > > I'm using PyMOL as a front end to a few scripts. So, I need > to get my hands on sys.argv to process the command-line > arguments. On OS X, everything works just like I'd expect. > However, on Linux, I can't get sys.argv. Here's a very simple > Python script: > > #!/usr/bin/env python > import sys > print dir(sys) > print sys.argv > > When I run pymol -cr ./my_script.py on Linux, I get this: > > PyMOL>run ./x.py,main > ['__displayhook__', '__doc__', '__excepthook__', '__name__', > '__stderr__', '__stdin__', '__stdout__', '_getframe', > 'api_version', 'builtin_module_names', 'byteorder', > 'call_tracing', 'callstats', 'copyright', 'displayhook', > 'exc_clear', 'exc_info', 'exc_type', 'excepthook', > 'exec_prefix', 'executable', 'exit', 'exitfunc', > 'getcheckinterval', 'getdefaultencoding', 'getdlopenflags', > 'getfilesystemencoding', 'getrecursionlimit', 'getrefcount', > 'hexversion', 'maxint', 'maxunicode', 'meta_path', 'modules', > 'path', 'path_hooks', 'path_importer_cache', 'platform', > 'prefix', 'setcheckinterval', 'setdlopenflags', 'setprofile', > 'setrecursionlimit', 'settrace', 'stderr', 'stdin', 'stdout', > 'version', 'version_info', 'warnoptions'] Traceback (most > recent call last): > File "/users/mlerner/src/pymol/modules/pymol/parser.py", > line 287, in parse > > parsing.run_file(exp_path(args[nest][0]),__main__.__dict__,__m > ain__.__dict__) > File "/users/mlerner/src/pymol/modules/pymol/parsing.py", > line 407, in run_file > execfile(file,global_ns,local_ns) > File "./x.py", line 4, in ? > print sys.argv > AttributeError: 'module' object has no attribute 'argv' > PyMOL: normal program termination. > > While pawing around in the PyMOL sources, I found that > pymol_argv shows up. It seems to be what I want, but I don't > know how stable it is. Am I supposed to use it instead of sys.argv? > > Thanks, > > -michael > > -- > Biophysics Graduate Student > Carlson Lab, University of Michigan > http://www.umich.edu/~mlerner > > -------------------------------------------------------------- > ----------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and > a browser. > Download your FREE copy of Splunk now >> > http://get.splunk.com/ _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
