In the past, I've had some strange issues with loading AMBER
trajectories (they might all be fixed by now), but the following has
always worked for me:
1) Rename your files so that they have the same filename and the
extensions .top and .trj. For instance, if you're studying the protein
1YCR, you might name them 1YCR.top and 1YCR.trj.
2) Open up PyMOL and load the topology file ("load 1YCR.top")
3) Load the trajectory file ("load_traj 1YCR.trj")
After that, you may wish to align things with intra_fit.
-michael
--
Biophysics Graduate Student
Carlson Lab, University of Michigan
http://www.umich.edu/~mlerner
On 7/10/07, Kailee <[email protected]> wrote:
Dear all,
I have downloaded Pymol0.99 for linux, and after following the instalation
notes, I got error message: "pymol.exe: error while loading shared
libraries: libGLU.so.1: cannot open shared object file: No such file or
directory" when I tried to use pymol, can anyone suggest why does this
happen?
Also, as I am trying to look at the AMBER md trajectory files (.mdcrd) using
PyMol, however after I installed PyMol windows version (successfully), in
the "Open" tab, I can't find anywhere to load such files, can anyone suggest
me how to do this please? thank you in advance!
Regards,
Kailee
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