Hi all, I am trying to fit part of my search model into my experimental density using pymol. I got initial model fitting to the experimental map using molrep, but want to make some changes to certain helices and strands before I pop the model into a rigid body and simulated annealing run, since they're obviously off by eye and a correction here would make the subsequent runs that much better. I've done the following:
Loaded molrep fit model Loaded experimental maps Created selection of residues to move Turned selection into an object Moved object using "3-button Editing" mode Save object.pdb, object name However, when I look at the saved file that should contain the coordinates of the adjusted model, it is empty except for an END statement. As a control I loaded another model, rotated it in editing mode, then saved it as a new pdb file (so no selection creation or change from selection to object). It also wrote an empty but for END file. I googled around and look through some of the mailing list, but have not found any clues. I also used File-> Save molecule from the pull-down menu, same result. Does anyone have an idea what is going on or how to correct? Pymol version 0.99rc6 running on Linux (CentOS 4.4) Stuart Endo-Streeter ______________________________________ Stuart T. Endo-Streeter Structural Biology and Biophysics Dept. Biochemistry LSRC C266 Duke University 919-681-1668 stuart.endostree...@duke.edu
