Hi Jim, Hmmm. I think your best option is to color the surface according to the atoms and write the surface in povray format. This will give you all the vertices. Just another thought springing to mind, you could cycle over the atoms using a script, writing away only the part of the surface belonging to the active atom. I don't think the vertices are available otherwise, and you would need to dive into the source code to get them out otherwise.
Best, Tsjerk On 4/17/07, jjv5 <j...@jjv5.net> wrote:
Hello, Is there a way to access the individual vertices of a surface abd there association with atoms? I know it's done under the hood, but can I write some code that say returns a list of surface vertices associated with a particular atom? In the end, I'd like to know if two atoms share a surface vertex to determine if they are "surface neighbors". Thanks, Jim ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
-- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
