Hi,
you may try to change the B-factor with the rmsd values normalised
from 0 to 100 let' say ..
and then colour by spectrum->b-factor.
Probably there is another better way ... i dunno :P

Regards,

andrea

2007/4/4, David Briggs <bassoph...@gmail.com>:
Hi everyone...

I'm sure this has been covered in the pymol mailing list previously, but
I've looked back 12months and I can't find it.

Can I colour a structure by its rmsd from another strucutre.

Thanks in advance....

Dave

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