Hi Clara Try
set ribbon_trace_atoms, 1 or set cartoon_trace_atoms, 1 Daniel On Wed, 2007-02-28 at 10:10 +0100, Clara Marco wrote: > Hi! > I'm trying to build a morphing movie to show the transition between > two conformational states of a protein. I've run morphing with > program LSQMAN, which has generated intermediate pdb files between > start.pdb and end.pdb.The problem is that to avoid geometry > distortions I've used a LSQMAN option that only uses CA's and few > side chains (selected by proximity of the ligand that induces the > conformational change), and now, the intermediate pdbs only have CA's > coordinates. > Is there any possibility to represent these pdb's with pymol > (cartoon/ribbon)? I've tried it but it only represents points/spheres > corresponding to the CA's. > If not, does anyone know how to calculate morphing intermediate pdb's > suitable to be represented with pymol? > Thank you very much. > Clara > Clara Marco-Marin > Instituto de Biomedicina de Valencia > Consejo Superior de Investigaciones Cientificas > C/Jaime Roig, 11 > 46010 Valencia > España > > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users -- Dr Daniel John Rigden Tel:(+44) 151 795 4467 School of Biological Sciences FAX:(+44) 151 795 4406 Room 101, Biosciences Building University of Liverpool Crown St., Liverpool L69 7ZB, U.K.
