Kirk,
Just FYI, you are outside the realm of what PyMOL has been designed to do
(so far). Regardless,
editor.attach_amino_acid("junk/94/C","trp")
seems to work with current versions (0.99rev8 and the latest 1.00 beta
code).
Cheers,
Warren
_____
From: pymol-users-boun...@lists.sourceforge.net
[mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Kirk Vander
Meulen
Sent: Friday, February 02, 2007 1:44 PM
To: PyMOL-users@lists.sourceforge.net
Subject: [PyMOL] attach_amino_acid
I'm having some trouble getting this function to work correctly.
My pdb is called junk and residue 94 is the c-terminus, and I want to add a
tryptophan to it- here's my input
editor.attach_amino_acid('junk & resi 94 & name c', 'trp')
The result is that the tryptophan is built, but it's not bonded (it's a
separate object, actually). Could anyone tell me what I'm doing wrong?
Thanks,
Kirk
