> Is there a good way to calculate and color residues by hydrophobicity > in > pymol? A google search showed only a very simple script that was based > entirely > on a single-residue lookup table. I'm looking at a set of structure > predictions, and it would be nice to easily see that a fold exposes a > large > patch of hydrophobic surface to solvent.
Could you clarify what you're trying to do? I'd think that coloring residues by hydrophobicity, displaying the surface, and looking for whatever your favorite color for hydrophobic is would work fine. Why would a lookup table be inappropriate for what you're trying to do? Pete Pete Meyer Fu Lab BMCB grad student Cornell University
