$PYTHONPATH is not set on my machine.
You wrote:
Re: segmentation fault after switching mainwindow between visualisation
and commandline
From: Martin <martin.hoefl...@gm...> - 2006-11-13 05:15
... i had a similar Problem this morning. What is your PYTHONPATH? For
me,
unsetting it solved the problems.
Cheers
Martin
segmentation fault after switching mainwindow between visualisation and
commandline
From: Christian Seifert <cseif...@bp...> - 2006-11-13 02:07
Hi,
I found a critical and reproducible bug using the 0.99rc6-binarys on my
machine.
Stepps:
- starting pymol from a kde terminal with user-rights
- loading a pdb-file (e.g. 1K5D from pdb-database)
- rotate the molecule with the mouse in any direction
- hitting "Esc" to get to the commandline-mode
- hitting "Esc" again to get back to the visualisation-mode
- trying to rotate the molecule again with the mouse
The programm crashes, the two windows of pymol disappear and my
terminal-window show the following error:
>./pymol: line 14: 7110 Speicherzugriffsfehler $PYMOL_PATH/pymol.exe "$@"
"Speicherzugriffsfehler" is the german word for segmentation fault.
There is nothing in dmseg.
The full output:
>cseif...@lexx ~/pymol $ ./pymol
>
> PyMOL(TM) Incentive Product - Copyright (C) 2006 DeLano Scientific LLC.
>
> A current PyMOL Maintenance and/or Support Subscription may be required
> for legal use of this Build beyond a finite honor-system evaluation period.
> Please visit http://www.pymol.org/funding.html for more information.
>
> This PyMOL Executable Build incorporates Open-Source PyMOL 0.99rc6.
> OpenGL graphics engine:
> GL_VENDOR: ATI Technologies Inc.
> GL_RENDERER: ATI MOBILITY FireGL V5200 Pentium 4 (SSE2) (FireGL) (GNU_ICD)
> GL_VERSION: 2.0.5946 (8.27.10)
> Detected 2 CPUs. Enabled multithreaded rendering.
>HEADER SIGNALING PROTEIN/SIGNALING ACTIVATOR 10-OCT-01 1K5D
>TITLE CRYSTAL STRUCTURE OF RAN-GPPNHP-RANBP1-RANGAP COMPLEX
>COMPND MOL_ID: 1;
>COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN;
>COMPND 3 CHAIN: A, D, G, J;
>COMPND 4 SYNONYM: RAN, TC4, RAN GTPASE, ANDROGEN RECEPTOR-
>COMPND 5 ASSOCIATED PROTEIN 24;
>COMPND 6 ENGINEERED: YES;
>COMPND 7 MOL_ID: 2;
>COMPND 8 MOLECULE: RAN-SPECIFIC GTPASE-ACTIVATING PROTEIN;
>COMPND 9 CHAIN: B, E, H, K;
>COMPND 10 SYNONYM: RANBP1, RAN BINDING PROTEIN 1;
>COMPND 11 ENGINEERED: YES;
>COMPND 12 MUTATION: YES;
>COMPND 13 MOL_ID: 3;
>COMPND 14 MOLECULE: RAN GTPASE ACTIVATING PROTEIN 1;
>COMPND 15 CHAIN: C, F, I, L;
>COMPND 16 SYNONYM: RANGAP, PROTEIN RNA1;
>COMPND 17 ENGINEERED: YES
> ObjectMolecule: Read secondary structure assignments.
> ObjectMolecule: Read crystal symmetry information.
> Symmetry: Found 1 symmetry operators.
> CmdLoad: "/home/cseifert/Desktop/1K5D.pdb" loaded as "1K5D".
>./pymol: line 14: 7110 Speicherzugriffsfehler $PYMOL_PATH/pymol.exe "$@"
Thanks,
Christian Seifert.
