1) I superimposed two protein structures. They are similar but have
different numbering of residues, e.g residue 34 in structure A is equivalent
to residue 38 in structure B. I want to show only the side chain of residue
34 for structure A and residue 38 for structure B. I selected only structure
A, and type the command: show sticks, resi 34; and select only structure B
and: show sticks, resi 38. But the residue 34 in structure B and residue 38
in structure A were also shown. Could anyone teach me how to show residue 34
in structure A and 38 in structure B only?

select 34A, resi 34 and structureA
select 38B, resi 38 and structureB
then show sticks 34A and show sticks 38B


2) Related to the same molecules. I want to show sticks for the R-group of
residue 34 only. I typed the command: show sticks, resi 34. But the backbone
atoms were shown also. Could anyone teach me how to show sticks for the
R-group only??

select 34AR, resi 34 and structure and not (name c,n,ca)
show sticks, 34AR

ciao

andrea
Thanks in advance!!!!


Phoebe
Graduate student

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