Anne, Okay, the problem has been identified and fixed in the open-source code. It was an all-or-nothing failure to expand geometry in situations where the sole target atoms are one or both last two atoms in the source object (a rare scenario).
Cheers, DeLano Scientific LLC Email Support Services > -----Original Message----- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > Of Anne Mølgaard > Sent: Friday, October 27, 2006 4:43 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] problems using "within" in selections > > I was trying to study the ligands in a structure, and then > zoomed in on a Zn ion in molecule A: > > create ligands, 1q74 and het and not resn HOH > > (Selector: found 28 atoms.) > > create ZnA, ligands and chain A > > (Selector: found 1 atoms.) > > create nearZnA, 1q74 within 6 of ZnA > > (Selector: found 0 atoms.) > > > > Last night, this worked fine. This morning, I talked to a > friend who could not make it work (same example), and then I > typed in the commands in her session and it worked. Using the > up arrow, we could not tell the difference between her > command and mine. Now, I can't make it work on my computer. > Why?? Should I be doing this in a smarter way? I am using > version 0.99rc7 with Windows XP. > > > > Best regards, > > > > Anne Mølgaard > > > > > > > > > -------------------------------------------------------------- > ----------- > Using Tomcat but need to do more? Need to support web > services, security? > Get stuff done quickly with pre-integrated technology to make > your job easier Download IBM WebSphere Application Server > v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&; > dat=121642 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
