Hi Siv, Try giving each chain a unique identifier. As pymol might believe that all the fragments belong to chain ' '.
Cheers Noel On Wednesday 23 August 2006 22:40, Siv Midtun Hollup wrote: > Hi, > > Hope this is the correct place for this question :) > > I have a pdb file with many small fragments in addition to a longer chain. > These are not numerated in any way, only separated by TER (example > below). In pymol, only two 'chains' appear, one with the long chain, and > the other with all the fragments mixed together. > > Do chains need to be separated by anything else than lines containing > TER? If I try to visualise the same pdb file in rasmol, the separate > chains are drawn up (for instance with ribbon). > > Also, is there a limit to how many chains pymol can handle? I might have > 1000 shorter chains in one pdb file. > > I run pymol 0.99rc6 for linux. > > Any help appreciated :) > > Sincerly, > Siv Hollup > -- PhD Student Department of Biochemistry and Molecular Biology Monash University Clayton, Victoria Australia Ph: +61 3 9905 1418 e-mail: noel.f...@med.monash.edu.au website: http://vbc.med.monash.edu.au/~fauxn
