I have some stuff from an amber8 (sander) MD run that I'd like to visualize in PyMOL. When I load it up, PyMOL says something like "assuming amber6 format" and dies. I'm using fink/pymol-py24 on an intel macbook pro. I always forget how to load amber files anyway, so I could easily be screwing something up. I call my topology file "something.top" and here's what happens:
PyMOL>load something.top ObjectMolecule: Assuming this is an Amber6 topology file. TOPStrToCoordSet-Error: Error reading atom types /sw/bin/pymol: line23: Bus error I made that file with amber8. Thanks, -michael
