Hi All-
If I have a protein with 150 residues (three 50 residue repeats;
1-50, 51-100, 101-150), and I want to align the first 100 residues
(resi 1-100) to the last 100 (51-150) ... and try to run the
following commands:
load structure.pdb
create s1, resi 1-100 and structure
create s2, resi 51-150 and structure
align s1, s2
PyMOL aligns residues 50-100 of s1 to residues 50-100 of s2 (the
region in common between s1 and s2). What I want to happen is for
PyMOL to align the entire structure of s1 (1-100) to s2 (50-150), so
that essentially the following sequences are aligned simultaneously:
resi 1-50 of s1 TO resi 51-100 of s2
resi 51-100 of s1 TO resi 101 to 150 of s2
Does anyone know how I can do this?
Thanks,
Doug
