Warren,
The problem is with ray tracing a surface from an old_session.pse.
Much better results if you retrace it with the version that created
it. Thanks for your help.
Mark
_________________________________
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry
Biophysics Research Division, University of Michigan
On Feb 28, 2006, at 6:13 PM, Warren DeLano wrote:
Hi Mark,
Hmm. PyMOL attempts to migrate old settings into the new model,
but it
isn't perfect and one may need to fiddle with the various settings
after
migration. We'll need a new feature to reinitialize settings without
deleting content so thanks for the suggestion! In the meantime,
you can
do something like this:
from chempy import io
sess=io.pkl.fromFile("old_session.pse")
del sess['settings']
io.pkl.toFile(sess,"new_session.pse")
load new_session.pse
which will load the old session with new default settings.
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942 Tech:(650)-872-0834
. Fax:(650)-872-0273 Cell:(650)-346-1154
. mailto:war...@delsci.com
-----Original Message-----
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
Mark A Saper
Sent: Tuesday, February 28, 2006 11:12 AM
To: Pymol
Subject: [PyMOL] Set all settings to default
0.99 and 0.98 have different ray tracing and lighting models.
When I read an old .pse file into .99, are the settings in
the old file converted to the new style? Is there a way to
reset all of the settings to default values, without
modifying the objects themselves?
Thanks,
Mark
_________________________________
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry Biophysics
Research Division, University of Michigan Chemistry Building
Room 3040 930 N University Ave Ann Arbor MI 48109-1055 U.S.A.
sa...@umich.edu (734) 764-3353 fax (734) 764-3323
http://www.biochem.med.umich.edu/biochem/research/profiles/saper.html
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