Hey all,
I'm trying to make a figure from a pdb that's supposed to look like an
EM structure. According to an older post from Warren I should increase
solvent_radius and alter vdw.
For most combinations of the two, artefacts appear all over the place,
like missing surface and surface floating about. I succeeded in making
a figure without artifacts (high vdw increase, minimal solvent_radius
increase), but it looks more like a lychee than a protein.
Has anyone found numbers that work well? Or a different approach to
creating an EM reconstruction-like figure.
Merci bien.
Andreas
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--> Andreas Förster <--
Institut de Biologie Structural, Grenoble
www.biochem.utah.edu/~andreas
