Kasper, Those regions show up fine with the latest beta versions (e.g. beta19 tested), so please upgrade.
http://delsci.com/beta Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > randkas...@icqmail.com > Sent: Tuesday, October 18, 2005 8:39 AM > To: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] Missing parts in cartoon mode > > The two missing loops of the 1DAN structure when in cartoon > mode are located to res. 183-189 and 220-220. I´m using a > standard PC with Windows 2000. > > Any suggestions? A fellow collegue in my lab is having > identical troubles but he´s also using a PC with win2000. Its > quite frustrating because the rest of the structure looks > great in PyMol! > > > > Cheers Kasper > > > > > > <-----Original Message-----> > > From: Joel Tyndall > Sent: 10/17/2005 12:07:00 AM > To: randkas...@icqmail.com > Subject: Re: [PyMOL] Missing parts in cartoon mode > > Hey Kasper, > > which loops can't you see (amino acid nos./chain/)? what OS > are you on (OSX, PC, Linux?) I have had a look and it looks > ok on windows > > Cheers > > J > > randkas...@icqmail.com wrote: > > > Hi everybody > > I am getting quite desperate! For some strange reason PyMol do not > > display certain areas (several loops) of my .pdb file > (1DAN) when in > > cartoon display mode. When I display the structure in "lines" or > > "sticks" everything is ok. Other pdb-viewers dont have this problem > > with the same .pdb file. I have tried several things: > > 1. Upgraded to the newest version og PyMol. > > 2. Redefined secondary structure using the "alter" command. > > 3. Imported the .pdb file into SwissViewer, saved as the imported > > structure as a .pdb file, and then imported into PyMOl. > > > > None of these things have solved the problem. Help please! (I would > > hate to have to start using another pdb-viewer!!) Cheers Kasper > > > > _______________________________________________________________ > > ICQ - You get the message, anywhere! > > Get it @ http://www.icq.com > > > > > > > > -- > Joel Tyndall, PhD > > Lecturer > National School of Pharmacy > University of Otago > PO Box 913 Dunedin > New Zealand > > Pukenga > Te Kura Taiwhanga Putaiao > Te Whare Wananga o Otago > Pouaka Poutapeta 913 Otepoti > Aotearoa > > Ph / Waea +64 3 4797293 > Fax / Waeawhakaahua +64 3 4797034 > > > . > > > _______________________________________________________________ > ICQ - You get the message, anywhere! > Get it @ http://www.icq.com > > >
