Hi Warren,
thanks a lot for the quick & useful information concerning H-bond
visualization.
All the best,
Michael.
----- Original Message -----
On Monday 17 October 2005 22:16, Warren DeLano wrote:
Michael
d/l a recent build http://delsci.com/beta
and use the "find"->"polar contacts" option under the objects Action "A"
menu in the viewer window.
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942 Tech:(650)-872-0834
. Fax:(650)-872-0273 Cell:(650)-346-1154
. mailto:war...@delsci.com
> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Michael Weber
> Sent: Monday, October 17, 2005 5:03 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] automated H-bond computation & visualization
> in pyMOL?
>
> Hello everybody,
> I am new to PyMOL and I have a short question: In pyMOL - is
> it possible to automatically compute and visualize H-bonds in
> .PDB files as it is e.g. possible in SWISS-PDB-VIEWER? Maybe
> there is a pyMOL script for this purpose? I need such a
> function for my work with catalytically active RNA molecules
> (e.g. PDB # 2A2E, 2A64, 1NBS, 1U9S). Would be nice if someone
> could help me with this problem...
>
> All the best & thanks in advance,
> Michael.
