Hi James,
Sounds like you want a homology model type set up, ie generate
coordinates based on a template. Modeller can do this and an easier way
is via the swissmodel
http://swissmodel.expasy.org//SWISS-MODEL.html
If however you want a relatively random structure then pymol _can_ do
this. Click on builder (top right og GUI) and then select protein. From
here you can generate any sequence you want. You can then export this
and use the program of your choice to run dynamics etc
Hope this helps
J
James R. Graham wrote:
Hello,
This may be slightly off-topic, but I was wondering whether PyMol
would allow one to enter a peptide sequence (generally short in
length) to create a template structure that can then be used for
structural refinements (minimizations, etc.) elsewhere.
If PyMol cannot do this, is anyone aware of any program (preferably
Mac OS X or linux compatible) that would be able to do this?
Any info would be greatly appreciated.
And apologies if this question is too far off-topic.
Regards,
james
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