Andre, * tree <javer...@utmb.edu> [2005-06-20 23:31] wrote: > > The Wiki (http://www.pymolwiki.org/) has some information about this. > It also shows you how to change some properties to make things easier to > fit. > > Intra_Rms (http://www.pymolwiki.org/index.php/Intra_Rms), and Fit > (http://www.pymolwiki.org/index.php/Fit) on the wiki may help.
I have a script for doing this as well. It is useful when the align function doesn't fit enough atoms (due to non-identical sequences). The script is called fitting.py and can be found in: http://adelie.biochem.queensu.ca/~rlc/work/pymol I also have a description of the steps involved if you want to do it yourself: http://adelie.biochem.queensu.ca/~rlc/work/teaching/BCHM823/pymol/alignment/ Cheers, Rob -- Robert L. Campbell, Ph.D. <r...@post.queensu.ca> Senior Research Associate phone: 613-533-6821 Dept. of Biochemistry, Queen's University, fax: 613-533-2497 Kingston, ON K7L 3N6 Canada http://adelie.biochem.queensu.ca/~rlc PGP Fingerprint: 9B49 3D3F A489 05DC B35C 8E33 F238 A8F5 F635 C0E2
