Warren,
Exactly what I needed!
cheers
Dan
On 5 Apr 2004, at 23:08, pymol-users-requ...@lists.sourceforge.net
wrote:
Message: 10
From: "Warren DeLano" <war...@delanoscientific.com>
To: "'Todd Geders'" <ged...@purdue.edu>,
"'Ann Mullin'" <amul...@tulane.edu>
Cc: <pymol-users@lists.sourceforge.net>
Subject: RE: [PyMOL] biological unit question
Date: Mon, 5 Apr 2004 13:07:13 -0700
Todd,
Try MacPyMOL for the full PYMOL effect. http://delsci.com/macpymol
There is also a new command in the 0.95 series:
split_states object-name
which will spread a PDB "biological unit" (or any multi-state object --
including SD files) over a series of independent objects. This makes
it
possible to interact with such objects more naturally than with
"all_states
= 1".
load 1c8e.pdb1, 1c8e
split_states 1c8e
delete 1c8e
zoom
spectrum b
hide lines
set cartoon_sampling,3
show cartoon
bg_color grey70
set hash_max, 150
ray
...
orient
zoom complete=1
ray
image & screen-shot at:
http://delsci.com/img/1c8e.jpg
http://delsci.com/img/1c8e-screen.jpg
Note that looking at large systems such as this (255300 atoms) may
take some
extra RAM -- 1.5 GB is recommended for this task, and it still takes a
dual
2 Ghz G5 85 seconds to render...
Cheers,
Warren
Dr. Daniel James White BSc. (Hons.) PhD
Cell Biology
Department of biological and environmental science
PO Box 35
University of Jyväskylä
Jyväskylä FIN 40014
Finland
+358 14 260 4183 (work)
+358 468102840 (new mobile)
NEW PHONE NUMBER!!!
http://www.chalkie.org.uk
d...@chalkie.org.uk
wh...@cc.jyu.fi
