John, Welcome to PyMOL!
> I wish to do the equivalent to the following molscript > command "line position res-atom A97 OE1 to position res-atom M200 MN;" dist my_line, a/97/OE1, M/200/MN hide labels Also note that PyMOL can draw hydrogen-bonds automatically using its limited chemical intuition according to the global "h_bond_..." settings. (Sorry guys, that isn't documented -- I am thinking about creating a new command for it since "dist" isn't the right place for this). dist hbnd, all, all, mode=2 hide labels (But I don't think that will help with MN.) If you don't want dashes, then set dash_length, 3 set dash_gap, 0 Seems to work for me... Cheers, Warren > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > John Berrisford > Sent: Thursday, February 19, 2004 10:09 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] drawing hydrogen bonds or dashes > > I have searched the manual and forum and cannot find how to > draw a hydrogen bond between two specific atoms. > > I wish to do the equivalent to the following molscript > command "line position res-atom A97 OE1 to position res-atom M200 MN;" > > which draws a line between two atoms A97 OE1 and Mn200. So > not a hydrogen bond but a specific line. > > Is this possible in pymol? > > I have read posts on changing the thickness of a dash and the > number of dashes in a line. But none on how to draw the line. > > Can anyone help me, i'm a new user by the way! > > thanks > > John > > > > ------------------------------------------------------- > SF.Net is sponsored by: Speed Start Your Linux Apps Now. > Build and deploy apps & Web services for Linux with a free > DVD software kit from IBM. Click Now! > http://ads.osdn.com/?ad_id=1356&alloc_id=3438&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
